When I uninstalled Firefox Nightly, why did it remove all of my bookmarks and plugins for Firefox itself? I didn't tell it to remove such features.
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If you selected the option to "Remove my Nightly personal data and customizations" when uninstalling the Nightly version, you deleted all your Firefox Profiles.
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Chosen Solution
If you selected the option to "Remove my Nightly personal data and customizations" when uninstalling the Nightly version, you deleted all your Firefox Profiles.
That is frustrating. I assume that is what happen, but I wish it would have warned me that they pulled from the same file location. I still use Firefox and would loved to have kept those files. Oh well. Thanks the-edmeister.
You can try if you can recover that deleted profile or at least a JSON backup in the bookmarkbackups folder with an undelete utility like Recuva