You know, I was doing some more troubleshooting on my end, and it looks like I did speak too soon on ALL anchors not working. Regular ones work fine. The ones I'm working in are actually within a web program using alot of Java.
Now, it didn't always give this issue. All versions of Firefox before 4 let these anchor links work in the page...FF4 seems to keep it from happening.
Because it's working in an a website that requires login information, I'll go ahead and abandon this thread. I'll try to solve it on my own time. But thank you for the help!